miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|211648949|gb|GE516035.1|GE516035 AGTTTCAACCCGCGTTACTTATCAATTGGGTTGATTTGATATTTTTTGTATACGTAACGGGTCACAGGACATGAACGGGT
CAAAGGTCACCACAAAGTGTTCTTTTAATGCATACAACATTCTATATCAGTTTTACCACTAACCAAGATCAATAAAGCCT
TTTACCTGAACTGTTGAGAATCTTGATGATGCATTATTCCAGAAGCTTCCTCTTCTGCACATATTTCTAAAGACGTGACC
CTTCGATTCCGAGCCGCAGTAAGAAACACGTGGCTAATTCGCGCAAACGCGTTTTTTTCTTGGGTTTTTTCGCCAAACCG
ATAAGTGACGGTTCCAAACAAGAACATTATTAGGGCAAAACCCATCATAACACAAGGAATCCCAAAGCCAAGACCCCAAC
TAAGGTTATCTTGAATGTAACTAAGAACAAGGATCCCAACTGTAGCTCCTGCACACAATCCAAAATACCACCAGTTGAAG
AATGAGCTTTTGGATTTGAGTTCTTCTGGATCATCTGCATCAAACTGGTCAGCCCCAAATGCCTCAACACATGGCTTGTG
TCCACATTGGGCAAATGCCACTAGATACAAAGCAATGAAAAATATGACAACTTGGAGCTGAGGTGAACATGATGAGCCAT
CAATGGAGTTTGTACAGTCAGATGTAATCGATGTTGAAAAGCCAGCAATGCAAGTGCCAGGATATAGAGC




Most similar to sp|Q0WP01|PTR9_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q0WP01|PTR9_ARATH Probable peptide/nitrate transporter At1g22540
           OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1
          Length = 557

 Score =  206 bits (525), Expect = 9e-53
 Identities = 101/182 (55%), Positives = 128/182 (70%), Gaps = 1/182 (0%)
 Frame = -1

Query: 710 ALY-PGTCIAGFSTSITSDCTNSIDGSSCSPQLQVVIFFIALYLVAFAQCGHKPCVEAFG 534
           ALY  G  +   S  I SDC  S   SSCSP+ QV+ FF ALYLVA AQ GHKPCV+AFG
Sbjct: 110 ALYIVGLGVLTLSAMIPSDCKVSNLLSSCSPRFQVITFFSALYLVALAQGGHKPCVQAFG 169

Query: 533 ADQFDADDPEELKSKSSFFNWWYFGLCAGATVGILVLSYIQDNLSWGLGFGIPCVMMGFA 354
           ADQFD  +PEE K+KSSFFNWWYFG+C G    + VL+YIQDNLSW LGFGIPC+ M  A
Sbjct: 170 ADQFDEKEPEECKAKSSFFNWWYFGMCFGTLTTLWVLNYIQDNLSWALGFGIPCIAMVVA 229

Query: 353 LIMFLFGTVTYRFGEKTQEKNAFARISHVFLTAARNRRVTSLEICAEEEASGIMHHQDSQ 174
           L++ L GT TYRF  + ++++ F RI +V++ A +N  V++L++ A EE  G++    SQ
Sbjct: 230 LVVLLLGTCTYRFSIRREDQSPFVRIGNVYVAAVKNWSVSALDVAAAEERLGLVSCSSSQ 289

Query: 173 QF 168
           QF
Sbjct: 290 QF 291